Cambridge, Massachusetts
New York, New York
Los Angeles, California
Davis, California
Sacramento, California
Portland, Oregon
Posted: 19-May-23
Location: Phoenix, Arizona
Type: Full Time
Salary: Open
Categories:
Internal Number: 742820
Position Summary
This position provides a unique opportunity to develop and maintain the bioinformatics solutions for the Clinical Genomics Laboratory. The successful candidate will also be involved in the analysis of clinical Next-Generation Sequencing data, including gene panels and whole exome sequencing data. This position receives supervision of completed work activities from the Director of Clinical Genomics.
Education
- Master's degree or PhD in bioinformatics, computational biology or related field (Required)
Experience
- Master's degree with at least 7 years of experience (of these, at least 2 years of experience in the clinical genomics laboratory) -OR-
PhD degree with at least 4 years of experience (of these, at least 2 years of experience in the clinical genomics laboratory) (Required) - Proficient in Unix/Linux and programming languages including Python, Java, R, etc. (Required)
- Demonstrated experience in developing and maintaining software/pipelines for NGS data analysis (Required)
- Experience with pipeline work flow engines such as Toil, Nextflow, Snakemake (Required)
- Experience with high performance computing clusters using Slurm or equivalent, object storage, containers, etc. (Required)
- Familiarity with NGS quality control measures (Required)
- Experience with WES/WGS, RNA-Seq, cancer genomics somatic variant calling, etc. (Required)
- Experience with version control systems (Required)
- Experience with SQL and relational databases (Preferred)
- Experience with cloud computing, machine learning methods, user interface and visualization – Preferred (Preferred)
Special Skills
- Proven analytical and problem-solving skills (Required)
- Experience in managing a team of bioinformaticians (Preferred)
- Experience with user interface and visualization (Preferred)
For more information about the hospital, visit: http://www.phoenixchildrens.org.
