This position will participate in Reactome and its related projects under the direction of the Principal Investigator, within the Department of Medical Informatics & Clinical Epidemiology (DMICE), an academic unit in the School of Medicine within Oregon Health & Science University (OHSU). This group is a part of an NIH supported, internationally collaborated Reactome project, the most comprehensive, open source biological pathway knowledgebase, widely used in the community for Systems Biology data analysis and visualization.
The Research Software Developer will be working on the NIH funded project to develop a Reactome portal for the NIH Illuminating the Druggable Genome (IDG) Program by integrating Reactome web-based widgets with large data sets covering understudied proteins in the context of biological pathways and networks in a cloud computing environment.
Bachelors Degree with courses in Computer Science and Biology and at least 1-3 years of experience in the field
Extensive and solid Java programming experience and object-oriented programming by following standard programming conventions and best practices
Working experience in Linux, apache tomcat, SQL database and/or no-SQL database
Experience of working in a team environment with a distributed source code management system (e.g. GitHub)
Self-motivated, willing to learn new things, and enjoying working in a globally distributed team environment
Masters degree in Bioinformatics or Computer Science with at least 1 year of working experience in the field
Experience with Google Web Toolkit (GWT)
Working experience in MySQL and Neo4j databases
Experience with Spring and Hibernate
Experience with Amazon AWS
Some experience with machine learning and R
Apply here online. Please be sure to upload a cover letter and resume or CV.
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