In this exciting role, you will develop proof-of-principle research projects that integrate microbial sequence-based data with the US Department of Energy Systems Biology Knowledgebase (KBase) functionality, ranging from analysis tools and data architectures to other data types such as metabolomics and synthetic biology.
You will work closely with KBase leads in Advanced Systems Science and Current Systems Science to determine new research areas with potentially high impact on the KBase Roadmap and KBase Users. You will use in-depth knowledge of genome biology to provide input on data type design and data analysis. You will implement state-of-the-art computational workflows for the analysis of diverse genomic datasets and will provide an expert technical and biological interpretation of the results. You will communicate with KBase staff and external scientists at all stages of analyses and facilitate the transfer of data and tools. You will effectively work across groups in a multi-site, multi-team setting. You will also support KBase Help Desk, and work with KBase Users to advance their science through data analysis, co-authored publications, and joint grant proposals.
What You Will Do:
In alignment with the KBase roadmap, use expert knowledge of genome biology and bioinformatics to provide an interpretation of genomic and metagenomic datasets and present findings to the internal and external scientific staff at various forums.
Contribute to the development of approaches to study genomes, metagenomes, microbiomes, and systems biology that support goals and timelines established by KBase management.
Use scientific and technical expertise to develop new computational approaches to extract and analyze highly complex microbiome datasets that align with community targets for the KBase engagement efforts.
Serve as expert KBase scientist in meetings with external users; provide scientific advice to resolve complex issues arising during KBase project execution and analysis; communicate KBase science capabilities.
Contribute to presentations and publications and train other team members.
Maintain accurate and detailed codebase following open-source software best practices.
Collaborate with other National lab scientists on proof-of-concept science studies to test and demonstrate the utility of new functional capabilities to the KBase user community.
May develop independent proof-of-principle science projects to advance KBase science capabilities.
May train and direct the work of technical support staff or students.
What is Required:
At least 3 years of relevant experience beyond the highest degree in genome biology, informatics, or a related field.
Extensive experience in genomic analysis and interpretation; significant research accomplishments, including a strong publication record.
Demonstrated success in leading design and implementation of significant systems and software in a scientific, bioinformatic or technical environment with a focus on emerging/new technologies and platforms.
Demonstrated ability to troubleshoot highly complex technical problems; recommend and implement actions.
Experience managing complex projects including advanced analytical, organizational, and record-keeping skills.
Experience establishing effective collaborations and interacting with members of scientific and informatics communities.
Effective verbal and written communication skills, including public speaking and presentation skills.
Proficiency in written and verbal science communications.
Excellent interpersonal communication, team building, and networking skills.
Ability to conduct presentations for groups of scientists.
Customer service skills and willingness to assist product users.
Knowledge of scientific theories and concepts related to genomics, molecular biology, biotechnology, bioenergy, carbon cycling and biogeochemistry, industrial biotechnology, and bio-based chemicals.
Demonstrated ability to work independently as well as a part of a diverse team.
Ability to apply analytical skills, problem solve and exercise sound judgment in support of the larger team and organization.
Strong proficiency in UNIX environment, command of python, and use of bioinformatics analysis and data visualization tools; significant experience in using integrated databases, and web-based development tools; experience using parallel computing environments.
Proficiency with Microsoft Word, Powerpoint, Excel, Google Suite.
Ph.D. in genome biology, informatics, or a related field with postdoctoral experience.
Demonstrated supervisory skills and experience in leading a team of technical employees.
Course work in advanced data analysis and database management.
For full consideration, please apply by March 22, 2021.
This is a full-time, 2 year, career-track term appointment that may be converted to career based upon satisfactory job performance, continuing availability of funds, and ongoing operational needs.
This position may be subject to a background check. Any convictions will be evaluated to determine if they directly relate to the responsibilities and requirements of the position. Having a conviction history will not automatically disqualify an applicant from being considered for employment.
Work will be primarily performed at Lawrence Berkeley National Lab, 1 Cyclotron Road, Berkeley, CA.
Learn about us!
Environmental Genomics and Systems Biology
Mission:Linking genome biology to ecosystem dynamics.
Vision: Sustainable solutions to energy and environmental challenges developed through mechanistic understanding of ecosystem dynamics.
Approach:We develop systems-level models using integrated molecular observation and controlled manipulation of model organisms and defined biomes to design and test interventions that promote beneficial outcomes.
Berkeley Lab (LBNL) addresses the world's most urgent scientific challenges by advancing sustainable energy, protecting human health, creating new materials, and revealing the origin and fate of the universe. Founded in 1931, Berkeley Lab's scientific expertise has been recognized with 13 Nobel prizes. The University of California manages Berkeley Lab for the U.S. Department of Energy's Office of Science.
Working at Berkeley Lab has many rewards including a competitive compensation program, excellent health and welfare programs, a retirement program that is second to none, and outstanding development opportunities. To view information about the many rewards that are offered at Berkeley Lab- Click Here.
Equal Employment Opportunity: Berkeley Lab is an Equal Opportunity/Affirmative Action Employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, disability, age, or protected veteran status. Berkeley Lab is in compliance with the Pay Transparency Nondiscrimination Provision under 41 CFR 60-1.4. Click here to view the poster and supplement: "Equal Employment Opportunity is the Law.
Lawrence Berkeley National Laboratory encourages applications from women, minorities, veterans, and other underrepresented groups presently considering scientific research careers.
Internal Number: 92138
About Lawrence Berkeley National Laboratory
In the world of science, Lawrence Berkeley National Laboratory (Berkeley Lab) is synonymous with excellence. Thirteen scientists associated with Berkeley Lab have won the Nobel Prize. Fifty-seven Lab scientists are members of the National Academy of Sciences (NAS), one of the highest honors for a scientist in the United States. Thirteen of our scientists have won the National Medal of Science, our nation's highest award for lifetime achievement in fields of scientific research. Eighteen of our engineers have been elected to the National Academy of Engineering, and three of our scientists have been elected into the Institute of Medicine. In addition, Berkeley Lab has trained thousands of university science and engineering students who are advancing technological innovations across the nation and around the world. Berkeley Lab is a member of the national laboratory system supported by the U.S. Department of Energy through its Office of Science. It is managed by the University of California (UC) and is charged with conducting unclassified research across a wide range of scientific disciplines. Located on a 200-acre site in the hills above the UC Berkeley campus that offers spectacular... views of the San Francisco Bay, Berkeley Lab employs approximately 4,200 scientists, engineers, support staff and students. Its budget for 2011 is $735 million, with an additional $101 million in funding from the American Recovery and Reinvestment Act, for a total of $836 million. A recent study estimates the Laboratory's overall economic impact through direct, indirect and induced spending on the nine counties that make up the San Francisco Bay Area to be nearly $700 million annually. The Lab was also responsible for creating 5,600 jobs locally and 12,000 nationally. The overall economic impact on the national economy is estimated at $1.6 billion a year. Technologies developed at Berkeley Lab have generated billions of dollars in revenues, and thousands of jobs. Savings as a result of Berkeley Lab developments in lighting and windows, and other energy-efficient technologies, have also been in the billions of dollars. Berkeley Lab was founded in 1931 by Ernest Orlando Lawrence, a UC Berkeley physicist who won the 1939 Nobel Prize in physics for his invention of the cyclotron, a circular particle accelerator that opened the door to high-energy physics. It was Lawrence's belief that scientific research is best done through teams of individuals with different fields of expertise, working together. His teamwork concept is a Berkeley Lab legacy that continues today.